FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410310
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28880.7038580585411031No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21240.5176573810046062No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18590.4530720674611879No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT16940.4128585703492481No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16620.40505958909117495No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14210.34632351149131146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12270.2990421876142429No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA11800.2875874338914479No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11300.2754015256757086No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10760.26224074480271015No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10250.24981111842265605No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9680.2359191830567132No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9310.22690161097706613No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7540.18376349589334895No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7460.18181375057883065No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7230.17620823279959055No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6790.16548463356973994No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6600.160853988447759No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6500.15841680680461115No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6310.1537861616826302No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6110.14891179839633448No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5930.14452487143866832No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5730.1396505081523726No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5460.13307011771587335No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5430.132338963222929No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5390.13136409056566986No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC4830.11771587336404181No Hit
CGCGCATCTATCGGTTCTAAAAGCGTCTCTA4770.11625356437815311No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4650.11332894640637566No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4510.10991689210596867No Hit
TCTCTGCCGCAGAAATCTCACGGTCGCACTC4480.10918573761302429No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4480.10918573761302429No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC4380.10674855596987642No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4270.10406765616241377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)