FastQCFastQC Report
Sun 21 May 2023
EGAF00007940928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394978
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20590.5212948569287403No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12980.3286258981512894No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT9910.2509000501293743No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8990.22760761358860496No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8680.21975907518899787No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7730.19570710267407299No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7500.18988399353888064No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6570.16633837834005943No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6140.15545169604383027No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5830.14760315764422324No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5550.14051415521877167No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5510.13950144058656433No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5440.13772918998020142No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT5330.13494422474163117No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5200.13165290218695724No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5060.12810840097423148No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4960.12557661439371307No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4740.12000668391657257No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4690.11874079062631338No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4610.11671536136189864No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4530.11468993209748392No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4470.11317086014917288No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA4390.11114543088475815No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4380.11089225222670629No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4260.1078541083300842No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4210.106588215039825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)