FastQCFastQC Report
Wed 31 May 2023
EGAF00007940929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394978
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68041.7226275893847252No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20000.5063573161036817No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19460.4926856685688823No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13110.33191722070596336No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC9800.24811508489080403No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8810.2230503977436718No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7930.20077067583510982No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7110.18001002587485884No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6130.15519851738577845No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5850.1481095149603269No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5810.14709680032811953No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5620.14228640582513455No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5560.14076733387682352No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5530.140007797902668No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5390.13646329668994223No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5110.12937429426449068No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4860.12304482781319466No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4840.12253847049709098No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4780.12101939854877992No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4730.11975350525852073No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4730.11975350525852073No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4690.11874079062631338No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4670.11823443331020968No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4600.11646218270384678No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4570.11570264672969127No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4480.1134240388072247No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4390.11114543088475815No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC4340.10987953759449894No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4230.10709457235592869No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4220.10684139369787685No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4220.10684139369787685No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4050.10253735651099556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)