FastQCFastQC Report
Wed 31 May 2023
EGAF00007940933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429503
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT71891.6737950608028347No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61271.4265325271301947No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29280.6817181719336071No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23490.5469111973606704No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18990.4421389373298906No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16800.3911497707815778No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16630.38719170762485944No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16490.3839321262016796No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15980.3720579367315246No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14820.3450499763680347No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14760.3436530129009576No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14600.3399277769887521No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13310.30989306244659526No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10890.25354886927448705No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9540.2221171912652531No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9510.22141870953171455No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9160.21326975597376502No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8770.2041894934377641No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8700.20255970272617418No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8580.1997657757920201No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7660.17834566929683843No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7440.17322346991755586No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6920.161116453202888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6560.1527346724004256No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6420.1494750909772458No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6420.1494750909772458No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6210.14458571884247606No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6120.14249027364186048No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5930.13806655599611645No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5890.13713524701806507No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5350.1245625758143715No Hit
GTCCCGATCAACAACCAGTTCATTCCGTATC5340.12432974856985866No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5260.1224671306137559No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5140.11967320367960177No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5020.11687927674544764No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4820.11222273185519077No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4500.10477226003077977No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4390.10221116034113847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)