FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383974
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29900.7786985577148453No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28390.7393729783787444No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG23990.6247818862735498No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG19280.5021173308609437No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG18540.4828451926432519No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG17980.4682608718298635No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG16510.42997702969471896No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG16220.4224244349877856No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG14330.37320235224259973No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG13360.3479402251194091No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11800.30731247428211284No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11410.2971555365727888No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11400.29689510227254967No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11210.29194685056800723No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG10840.2823107814591613No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9760.2541838770333408No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9450.24611041372592937No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG9220.24012042482043053No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG8940.23282826441373633No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG8590.22371306390536858No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT8520.22189002380369505No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7940.20678483438982845No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG7770.20235745128576416No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7550.1966278966805044No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7500.19532572517930902No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7240.18855443337309297No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7170.18673139327141944No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7070.18412705026902865No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7060.18386661596878956No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG7050.18360618166855047No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT6990.182043575867116No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6900.1796996671649643No Hit
GATGCTGATGGAGCGACGAATGCGGAAACCTTGCGGAGTACGAG6820.17761619276305168No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6730.17527228406089995No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6720.1750118497606609No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6540.17032403235635746No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6390.16641751785277129No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6310.16433404345085864No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5940.15469797434201274No Hit
GTCTTCTTTGGTTACGTCCTTAACAGTCAGGTTCTGACGACCGC5430.14141582502981973No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5120.1333423617224083No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG4950.12891497861834397No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC4780.12448759551427961No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4490.11693500080734634No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT4420.11511196070567277No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4330.11276805200352107No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4290.11172631480256476No Hit
GTCACGGCCATCCGTACCTTTGAACAGAGCCCAAGAATACTTGG4110.10703849739826135No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4000.10417372009563147No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC3900.1015693770932407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)