FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383974
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT69171.8014240547537073No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63981.6662586529296253No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG24770.645095761692198No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC23890.622177543271159No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG19360.5042008052628564No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG19150.49873168495783565No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG18580.48388692984420817No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC17170.4471656935104981No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG15660.4078401141743972No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG15650.4075796798741581No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15350.39976665086698576No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11660.3036663940787658No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC11610.30236422257757034No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11580.30158291967685313No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11450.2981972737737451No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG10590.2757999239531843No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10570.27527905535270614No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10340.26928906644720735No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9830.25600691713501433No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9500.24741258522712478No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG9310.24246433352258226No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG9270.24142259632162594No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC7940.20678483438982845No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7940.20678483438982845No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7630.19871137108241704No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7520.1958465937797872No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7440.19376311937787455No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7370.191940079276201No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7220.18803356477261482No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7080.1843874845692677No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6890.1794392328647252No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6890.1794392328647252No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6850.1783974956637689No Hit
GAAGTATACATGAACGACCTGGGCACCGATA6410.16693838645324943No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6370.16589664925229314No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6360.16563621495205405No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5320.13855104772718985No Hit
CCGGAATCCTATTCCGGTGAACTGGAATGCA5290.13776974482647264No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5020.1307380187200175No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC4860.12657106991619224No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4740.1234458583133233No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4480.11667456650710725No Hit
GAAGCCGTGAACCGTGCGGTGGCTCGTGTCG4410.11485152640543371No Hit
CACACCGCATACGCGAACTCTATCGATGGCA4190.10912197180017397No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4130.1075593659987395No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4120.10729893169850041No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4040.1052154572965878No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA3890.10130894279300161No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG3890.10130894279300161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)