FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399017
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG24180.6059892185044747No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22000.5513549548014245No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21090.5285489089437292No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19780.49571822754418987No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA13440.3368277542059611No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11730.2939724372645777No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11330.2839478017227336No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT9780.2451023389980878No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8790.22029136603202368No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8050.20174579027961215No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8030.20124455850251996No Hit
ATCAGAGGATTTCGCATCGTTTTCTTTTTTATCCGGGGTTGCCA7860.1969840883972362No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7830.1962322407315979No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7370.1847039098584772No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7280.1824483668615623No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7000.17543112198227143No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6980.1749298902051792No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6860.171922499542626No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6430.1611460163351436No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG6370.159642321003867No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6010.15062014901620732No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5990.15011891723911513No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5830.1461090630223775No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5780.144855983579647No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5740.14385352002546256No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5570.13959304992017885No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5430.1360844274805334No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5410.1355831957034412No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5390.135081963926349No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5160.12931779848978864No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5070.12706225549287375No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4920.12330301716468221No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4820.12079685827922118No Hit
TTCGTCACCGGTGCTCGGCAGCTTACGCTTGTTGTTAGTGGATT4800.120295626502129No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4700.11778946761666796No Hit
GACTACCATGCTGTCTTTAACGAAGGTGGAGCAGTGATACAGTT4660.11678700406248356No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4650.11653638817393744No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4630.11603515639684525No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4620.11578454050829914No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4510.11302776573429202No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4490.11252653395719982No Hit
TTTACCACGTTTGCTGCGGCCCTTACGAGACGGCAGTTTGCCAG4460.11177468629156151No Hit
AACGTCATTTTTGCGCGCCTGTACTGGGTGTTTAACCACAATCG4440.11127345451446931No Hit
TTTGACGATGTACTTACGGTTGTTGTGAATATAGATACCTTTGT4370.1095191432946466No Hit
ACGGCCACCGCGCGGCGCCGCATCATCACGCATCAGTTCTGCCA4270.10701298440918558No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4250.10651175263209336No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4210.10550928907790896No Hit
ATAACCCGCGCTGGCACGAGAGGTGTGGTTCCAGGACAGATCCT4140.10375497785808625No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4080.10225128252680964No Hit
TTCCGGACGGTTAGTGGCCGCCAGAATGATTACGCCGTTGTTAC4080.10225128252680964No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG4030.10099820308407913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)