FastQCFastQC Report
Wed 31 May 2023
EGAF00007940942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482668
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA27980.5796945312305767No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27740.5747221692757755No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22810.4725815674542336No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18490.3830790522678114No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16750.34702942809550247No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15320.31740243811481184No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15230.3155378023817614No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15180.3145018936411778No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14380.2979273537918404No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14150.29316217358515584No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG12390.2566981859166135No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12010.24882527948817823No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11980.24820373424382808No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10530.21816238076690395No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10230.2119469283234024No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9980.2067673846204845No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA9570.19827293294769904No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG9400.19475084322971484No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9200.19060720826738048No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8560.17734757638791052No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8370.1734111231736929No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG8320.1723752144331093No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7630.15807967381305577No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7370.1526929483620211No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7240.14999958563650378No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7190.1489636768959202No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7030.1456487689260527No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6280.13011013781729885No Hit
TGGGCGCAGTTCCGGCGGGATTACCGGAACCGCGTCCAGTACCA6050.12534495761061432No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5750.1191295051671128No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5620.11643614244159547No Hit
TTCCAGCGCTACTGGGGAGTGACAGCTGTGGCCTTCACCGCAAT5340.11063505349432735No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4950.10255496531777536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)