FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482668
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46050.954071950077486No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC40580.8407435338576413No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA29460.6103574299518509No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27910.5782442589937596No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24020.49765055897635646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20540.4255513106317386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19340.4006895008577325No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18810.38970886820754636No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16720.34640788285115237No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG16330.33832779467460034No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15280.316573711122345No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15060.31201571266377714No Hit
TCCTACACCAACGGCAAACTGACTATCACCC12340.2556622771760299No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12240.2535904596948627No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10270.2127756553158693No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG9390.19454366148159813No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG9310.19288620749666438No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9140.18936411777868017No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9010.18667075505316283No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8390.1738254866699263No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG8240.17071776044817555No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8140.16864594296700838No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7870.163052035767857No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7600.1574581285687056No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7580.15704376507247217No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7270.1506211308808539No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6790.14067640697125147No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6730.13943331648255114No Hit
GAAGCAGAAAGCCTGCGTGATGTTATTCGTA6370.1319747735503493No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6210.1286598655804818No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6080.1259665028549645No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5880.12182286789263012No Hit
GGTTACTACCAGCTGCTGCAGGCCTCTCTGA5290.10959914475374379No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5280.10939196300562706No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5020.10400523755459239No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC5000.10359087405835896No Hit
CCGAGCACTAAACCGCGTCCGAAAAACCCTC4970.1029693288140088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)