FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404055
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66981.6576951157639428No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32410.8021185234683398No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15630.3868285258195048No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11550.2858521735902291No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11370.28139733452129045No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9330.23090915840665258No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8890.22001955179369145No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8170.20220019551793691No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6750.1670564650851988No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6190.15319696575961192No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5950.14725718033436044No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.13438764524631547No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4840.11978567274257218No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4520.11186595884223682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)