FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007940947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434056
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64491.4857529903975524No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9810.2260077040750502No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9210.21218460290838048No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9210.21218460290838048No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8310.19144995115837588No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7390.17025452936948227No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7210.16610759901948136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7030.16196066866948045No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6070.13984370680280886No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5670.13062830602502903No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5200.11980021011113774No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5090.11726597489724827No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4940.11381019960558085No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4920.11334942956669186No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4890.11265827450835837No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4410.10159979357502258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)