FastQCFastQC Report
Wed 31 May 2023
EGAF00007940948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374130
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17060.45599123299387917No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10640.28439312538422473No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9800.26194103653810175No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9460.25285328629086146No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6070.16224307059043647No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5930.1585010557827493No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5540.14807687167562078No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5160.1379199743404699No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4950.13230695212893914No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4880.13043594472509557No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4680.12509020928554246No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4560.1218827680218106No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4410.11787346644214577No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG4000.10691470879106192No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG3930.10504370138721836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)