FastQCFastQC Report
Wed 31 May 2023
EGAF00007940949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374130
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62091.659583567209259No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23490.6278566273755112No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16540.44209232085104105No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10050.2686232058375431No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6280.16785609280196723No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5740.15342260711517386No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5600.1496805923074867No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5110.1365835404805816No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4990.13337609921684976No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4990.13337609921684976No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4890.13070323149707322No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4670.1248229225135648No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4630.12375377542565419No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4410.11787346644214577No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG3900.10424184107128537No Hit
GTTCTGGTGCTGAACGAGCAGTCCGCATACC3840.10263812043941946No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT3750.10023253949162055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)