FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432808
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14110.3260106097854014No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13510.3121476497661781No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13000.3003641337498383No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG11670.26963457237389327No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11070.25577161235466994No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11000.25415426701909394No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9530.22019001497199683No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9180.21210328829411657No Hit
ACGGCGCGGACGTTTACGACCGGCAGAGAAGATATCAGTGGTGG8480.19592983493835603No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7530.17398014824125246No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7050.16288978022587383No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5900.13631910685569582No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5680.13123602151531394No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5340.12338034417108741No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5170.11945250549897414No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4770.11021053215282528No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4380.10119960814033012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)