FastQCFastQC Report
Wed 31 May 2023
EGAF00007940951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432808
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32680.7550692223803626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17330.4004084952218998No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15020.3470360991478901No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA11520.26616883236908745No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11490.2654756843681263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10980.2536921683517865No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10600.24491229367294504No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9740.22504205097872496No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA9420.2176484723018059No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8290.1915398975989353No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7290.16843496423356313No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6310.14579212953549842No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6140.14186429086338515No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5970.13793645219127187No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5870.13562595885473466No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5560.12846342951146927No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5070.11714201216243693No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4790.11067263082013272No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4660.10766898948263433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)