FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403503
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57251.4188246431872875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10660.26418638770963293No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9370.23221636518191935No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7360.18240260915036569No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5200.1288714086388453No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG4890.12118869004691414No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4850.12019737151892304No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4610.11424946035097631No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4460.11053201587100964No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4160.10309712691107624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)