FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390419
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24120.617797801848783No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22820.5845002420476463No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20570.5268698500841403No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC20550.5263575799333536No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17490.4479802468629857No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17210.4408084647519716No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13870.3552593495705895No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13840.3544909443444095No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13340.3416841905747415No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13330.3414280554993481No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13140.33656148906687433No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11630.29788509268247704No Hit
CGGCTGGTCTTCGGCCGTTGCTTCATCGTCGTGCAGATAATCCG10310.2640752627305536No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10240.26228231720280004No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9580.24537740222683835No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9100.2330829186079571No Hit
CGGCTGGTCCTCTGCAGTAGCTTCTTCATCGGACAGGTAATCCG8860.22693567679851648No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8390.21489732825502858No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG8150.20875008644558796No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8120.20798168121940788No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8080.20695714091783446No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7830.20055376403300043No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG7450.19082063116805278No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6860.17570866171984456No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6590.16879301468422386No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6520.16700006915647037No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6380.16341417810096331No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6180.15829147659309614No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5940.15214423478365552No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5930.15188809970826217No Hit
CGGCTGGTCAACTGGGTTTGCTTCGGAATCGCGCAGGTACTCCG5830.14932674895432857No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5730.14676539820039497No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5690.14574085789882152No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5630.14420404744646137No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5560.14241110191870784No Hit
CGGATACAGTGCCGGGGCGTTATCACCGACCAGACCCAGGAAGC5200.1331902392045469No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5020.12857980784746645No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4900.12550618694274612No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4330.11090648764532464No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4220.10808900181599769No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4180.10706446151442425No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4140.10603992121285082No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4110.10527151598667074No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG3940.10091721970498362No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT3930.10066108462959025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)