FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007940959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414118
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACAAAGTATACACCAAGGTGATGGGTC243175.87199783636548No Hit
TCTCACGAACAGGGTGTAATTGCAGAAAACG148163.5777242235304914No Hit
AACTACGCGGAGGAAATCCCGCAGGATCCGG97602.3568161731680344No Hit
TCTGCATGCACCGGTATCTCCTTCCTGGCGG78101.8859358926682734No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT67171.6220014585214844No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65401.5792600176761213No Hit
GAGATGACTTTCGCTGGCAAATACGATGAAC62641.512612347205386No Hit
GCTAAAGAAGAAAAAGAGCGTGCCGCGCTGG58411.4104675478969761No Hit
CTGGGCATCCGCGTGATCCCGGAAATTTCTC54271.3104960421908731No Hit
ACCGCTCAGAGCGACTACTTCCTGTCTTACT44111.0651553421971516No Hit
CAGGTGGTTTATGGCCTGCTGGACAAACTGA36780.8881526521426261No Hit
TGCAACGGCATCCTGAAGGAACTGCTGTCCA28290.6831386223250379No Hit
GTGTCCGGCGAGGTAAACGGCCACGCAGTTC22900.5529824832535655No Hit
AACGAAAAATGGCGTAAATATAAACTGACCG21560.5206245562858894No Hit
GGTACCTTCTCCTCTAGCACTTCTATGGATG21330.5150705837466616No Hit
AAAGACGTACTGGCTCCGGGCCACCCGTTCC19330.4667751703620707No Hit
GAGGTGCGCAGCAAATCCGACCCAATTATGC17230.4160649863082503No Hit
GGCCCGTTCTCTATCAACAACGACAAACAGG16560.3998860228244124No Hit
GGCATCTATTTCAAACCGGAACTGATGCCGA13490.3257525632790654No Hit
GACTTCGGCCGCTACGCGACCGGTGATGGTA9860.23809638798603297No Hit
AACCTGATGCGCATCGACGGTAACCCGGCCA9110.21998560796681138No Hit
GAATTTATTAACGGTCTAGCCAGCCGTTCAT8440.20380664448297345No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8180.19752824074297662No Hit
GTTTCCGGTCTGATTTGCCGTAAAGCACAGC7600.1835225708614453No Hit
AACTACGGCACCCTGGGCTACATCCACAACA6980.16855099271222213No Hit
CCAGCGGAAGTACGCGTGTTGGTGTAACCGT6640.16034077243684167No Hit
GACGCGTGCCCGCAGCTGAAAACCACTGCAC4930.11904819399301649No Hit
CTGACCGTTCCAGACATGATACTCACATTGG4710.11373569852071148No Hit
ATGGCTCGCTTCGTTTCTGAAGAAAAAGCAT4640.1120453590522508No Hit
CTGGACGTTCTGTACTCCACCGTGGAAAACG4580.1105964966507131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)