FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405739
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG36830.90772639553999No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT31980.7881914235506077No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26840.6615089996278396No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24690.6085192697768762No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA23750.5853516669583156No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23430.577464823445614No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22560.5560224676454568No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18570.45768338759645977No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17940.44215616443082867No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17460.43032589916177644No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17310.42662894126519757No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16040.3953280310741635No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13140.32385351174030597No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13090.3226211924414463No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12460.3070939692758152No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12390.3053687222574118No Hit
CAGACCCACGGATTCTTCGCTGGACAGGTGTTCACGGATGCGTT11790.29058089067109644No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11750.28959503523200875No Hit
CGCGAAGGTGTCCACCGGTTCAACTTCGCTCGGTGGCGGGGTCA11710.28860917979292106No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11660.28737686049406147No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11630.28663746891474573No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11330.279243553121588No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10780.2656880408341323No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10750.26494864925481654No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9970.2457244681926066No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9970.2457244681926066No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9750.24030226327762427No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8440.20801549764750243No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8080.19914279869571325No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT7610.1875589972864329No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7580.18681960570711711No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT7420.18287618395076638No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7320.18041154535304715No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7180.17696105131624024No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7010.17277116570011758No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6960.17153884640125794No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6950.17129238254148602No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6320.15576515937585492No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5990.14763185200338147No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA5530.13629451445387306No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5460.1345692674354696No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5420.1335834119963819No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4970.1224925383066454No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4800.11830265269052273No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4540.11189459233645276No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA4530.11164812847668082No Hit
CATGTGGTCACGCTGCATCAGACCGGCGTCCGGTTTCGGCAGAG4440.10942995373873352No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT4410.10869056215941776No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT4360.10745824286055815No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4340.10696531514101429No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4260.10499360426283891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)