FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404855
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT37860.935149621469415No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC37250.9200824986723641No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA29280.7232218942584382No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA24420.6031789159081646No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA23430.5787257166145904No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT22230.5490854750466216No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT19500.48165392547949265No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC19230.4749848711266997No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT18610.45967074631658245No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16480.4070593175334379No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15490.3826061182398637No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15030.371244025638809No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC14570.3598819330377543No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT14280.35271887465882845No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14180.3502488545281644No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA13630.33666374380951203No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12400.30628249620234405No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC12290.30356547405861356No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11830.2922033814575589No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11680.28849835126156276No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC11590.28627533314396514No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA11550.28528732509169946No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC11090.27392523249064477No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9040.22328981981203144No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8840.21834977955070334No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8220.20303565474058613No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT7990.19735460844005878No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7800.19266157019179705No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7800.19266157019179705No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7650.18895653999580095No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6980.17240740512035171No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6930.1711723950550197No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT6900.17043138901582047No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6830.16870237492435564No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6680.16499734472835956No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6330.1563522742710353No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6280.15511726420570326No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6230.15388225414037124No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6220.15363525212730483No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6050.14943621790517592No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6000.1482012078398439No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5920.14622519173531262No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5770.14252016153931654No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5740.14177915550011733No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5660.13980313939558606No Hit
CAGCAGAAATTCCTCTTCACCGGATTCCATCGGCGCGTGCTTGC5530.1365921132257228No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5340.13189907497746106No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5290.13066406491212904No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5280.13041706289906263No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5200.12844104679453136No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC5080.1254770226377345No Hit
GCGGCTCGGACCCGGCGGAGAGTGGGAAGAGCTGCAAGAGGTGA4970.12276000049400403No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA4960.12251299848093761No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC4910.12127798841560558No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT4700.11609094614121104No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4680.11559694211507823No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4570.11287991997134778No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC4480.11065690185375011No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4380.10818688172308603No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4310.10645786763162121No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4300.10621086561855479No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4220.10423484951402355No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4210.10398784750095713No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4210.10398784750095713No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4200.10374084548789073No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG4190.10349384347482432No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4130.10201183139642589No Hit
CAGTGCACGCAGGCCTTCAGCGATGTTTTCGAACTTTGGGTTGG4060.10028281730496104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)