FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446273
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52121.1678949880454341No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA47441.0630264434550152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24660.552576561880284No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23650.529944675120386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21600.48400866734039477No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20450.45823968736625337No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15040.33701344244442305No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11680.26172320530258386No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10870.24357288027731902No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9950.22295769629800594No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8790.1969646382371329No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7760.17388459530377146No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7750.1736605172170398No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7570.16962711165586983No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6900.15461387984484834No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6490.14542667828885011No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6280.14072103846748515No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5900.1322060711716819No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5640.12638004091665864No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA5460.12234663535548869No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5270.11808915170758705No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5250.11764099553412373No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5240.11741691744739206No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5150.11540021466680708No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5060.11338351188622212No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4910.11002234058524714No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4580.10262776372310223No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4470.10016290476905391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)