FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547535
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48760.8905366780205832No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11780.21514606372195383No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9360.17094797592847946No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7310.13350744701251976No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6810.12437561069155398No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6530.11926178235181313No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6170.11268686020071776No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6030.11012994603084734No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6020.10994730930442803No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5750.1050161176911065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)