FastQCFastQC Report
Sun 21 May 2023
EGAF00007940969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences594972
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14760.2480789011919889No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12980.21816152692899834No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12110.20353899007012097No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11900.2000094122076333No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8620.14488076749830245No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8180.13748546150070928No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7570.1272328781858642No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7540.1267286527769374No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7400.1243756008686123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6730.11311456673591364No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6190.1040385093752311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)