FastQCFastQC Report
Wed 31 May 2023
EGAF00007940970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582084
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17050.2929130503501213No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15830.2719538760728692No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13250.22763037637179512No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11970.2056404230317274No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10990.188804365005738No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9700.16664261515520096No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9280.15942716171549123No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG8870.1523835047862508No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8710.1496347606187423No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8560.14705781296170312No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7990.1372654118649542No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7230.12420887706928896No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7110.1221473189436576No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6960.11957037128661843No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6430.11046515623174662No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6170.10599844695954536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)