FastQCFastQC Report
Wed 31 May 2023
EGAF00007940971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582084
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24110.41420138674143253No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20570.35338542203530765No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15850.27229746909380775No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14760.2535716494526563No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12980.22299187058912462No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12800.21989953340067758No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11800.20271988235374966No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10360.17798118484617342No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9570.16440926051910035No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9280.15942716171549123No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9180.15770919661079846No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8780.15083733619202727No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8690.14929116759780375No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8670.1489475745768652No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8110.13932696999058555No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7700.1322833130613451No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7350.12627043519492032No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7330.12592684217398176No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6810.11699342362957922No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5900.10135994117687483No Hit

[OK]Adapter Content

Adapter graph