FastQCFastQC Report
Wed 31 May 2023
EGAF00007940972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549121
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8250.15024011101378384No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7840.14277363276946248No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7690.14004199438739368No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6540.11909943345819957No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6090.11090451831199316No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5710.10398436774408555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)