FastQCFastQC Report
Wed 31 May 2023
EGAF00007940973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549121
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50570.9209263532081272No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16570.30175498660586647No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10640.19376421590141335No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7820.14240941431851997No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6480.11800677810537204No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6480.11800677810537204No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5510.10034218323466049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)