FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529179
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49240.9304979978419401No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG24570.464304139053137No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19160.36207030135360624No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15890.30027646599732793No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15260.2883712316626321No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12090.22846711604201983No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9280.1753659914698051No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9020.17045272015707352No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8940.1689409443685407No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8790.1661063647650417No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8730.1649725329236421No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7470.14116206425425046No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7420.14021720438641747No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7370.13927234451858445No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA6630.12528841847465602No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6370.12037514716192442No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6310.11924131532052482No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6070.11470598795492641No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5890.1113044924307276No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5690.1075250529593956No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5420.10242280967309737No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5420.10242280967309737No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5320.10053308993743137No Hit

[OK]Adapter Content

Adapter graph