FastQCFastQC Report
Sun 21 May 2023
EGAF00007940980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540496
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG16330.3021298955033895No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16100.29787454486249665No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15110.279558035582132No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13580.25125070305793196No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT12790.23663449868269149No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT12260.22682869068411238No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT10920.20203664781978034No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8190.15152748586483525No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT8170.15115745537432285No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7990.1478271809597111No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG7900.1461620437524052No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7880.14579201326189278No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT7350.13598620526331368No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT7090.13117580888665226No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6800.1258103667742222No Hit
GCCCAGGGTGATCTGCTGGACACGATCAGAGTAACCGCACGCTT6700.12396021432166011No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6640.12285012285012285No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6630.12266510760486664No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5740.10619875077706403No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5680.10508865930552677No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5490.10157336964565879No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5480.1013883544004026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)