FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540496
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48470.8967688937568454No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC17500.32377667919836595No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15960.29528433142890975No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15930.2947292856931411No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15620.2889938130901986No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14190.26253663301856073No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG13170.24366507800242743No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG12600.2331192090228235No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT11120.20573695272490455No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8930.16521861401379473No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8780.16244338533495162No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8350.1544877297889346No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8120.1502323791480418No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7880.14579201326189278No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG7690.14227672360202478No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG7500.13876143394215681No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC7150.13228590035818952No Hit
GACGCCGCGTCTTCTTCTTCCGCGGGTCAGT6920.12803054971729672No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6700.12396021432166011No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6540.12099997039756076No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6440.11914981794499865No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6330.11711465024718036No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6270.11600455877564311No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5930.109714040436932No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5730.10601373553180782No Hit
GACTTCAGCCAGGATCCGTCTAAGTTCACGG5460.10101832390989017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)