FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546849
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG21950.4013905118231907No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19290.3527481992286719No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16850.3081289350442261No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT11610.21230723654976055No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10430.19072906780482363No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG9460.1729910816331382No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9440.17262534995949522No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8880.16238486309749128No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8830.16147053391338376No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8800.16092193640291927No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8730.1596418755451688No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8560.15653315631920328No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8430.1541559004405238No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8320.15214437623548732No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA8280.1514129128882013No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8230.15049858370409383No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8060.14738986447812832No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7290.1333091950428729No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6980.12764035410140642No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6930.12672602491729892No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6880.12581169573319143No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA6160.11264535548204349No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT6050.11063383127700699No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5940.10862230707197051No Hit
CATCTTACCGTAGGTGGCGGTAACGGTGGCTTCCGCGTCCAGGC5710.10441639282507602No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5690.10405066115143304No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT5500.10057621025182455No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5500.10057621025182455No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5470.10002761274136006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)