FastQCFastQC Report
Sun 21 May 2023
EGAF00007940987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546849
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41800.7643791979138665No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT21810.39883039010768967No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA13870.2536349156714193No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT13020.23809131954159193No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT12450.22766796684276647No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10450.19109479947846664No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10180.18615742188428616No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10000.18286583682149915No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9890.18085431261646268No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9540.1744540083277102No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9530.1742711424908887No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9430.1724424841226737No Hit
TACGACGACTTCCATACCGATGAAGATAAAC9400.17189388661220922No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9210.16841943571260073No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT9040.16531071648663526No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9030.16512785064981375No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8480.1550702296246313No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8350.1526929737459518No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8250.1508643153777368No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8110.14830419366223582No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8050.14720699864130682No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7910.14464687692580586No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7710.14098956018937586No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7510.13733224345294587No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7490.13696651177930289No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6870.12562882989636992No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6690.12233724483358295No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5850.10697651454057702No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5840.1067936487037555No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5750.10514785617236203No Hit
AACGGCAATGTAACGATCAAAGGCGATACCA5480.10021047857818155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)