FastQCFastQC Report
Sun 21 May 2023
EGAF00007940989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538035
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48990.910535559954278No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24950.4637244788907785No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG23300.43305732898417393No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21170.39346882637746616No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19800.36800579887925505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18580.3453306940998262No Hit
CTGATTGGCTTCACCAACATCGACGGTCAGG14350.26671127343016715No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13170.24477961470908025No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13080.24310686107781093No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12420.2308400011151691No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11580.21522763388998858No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11100.20630628118988542No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10590.1968273439460258No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8970.16671777858317768No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8640.16058434860185677No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8430.15668125679556164No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8120.1509195498434117No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7810.1451578428912617No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7790.14478611986209075No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7310.1358647671619876No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7300.13567890564740212No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7120.13233339838486344No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6980.12973133718066668No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6010.1117027702658749No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5670.10538347876996851No Hit
TCTACCCAGCACACTGTTCAGTCCGGCGAAA5450.10129452544908787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)