FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517488
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47450.9169294746931329No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37180.7184707664718795No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30870.596535571839347No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22390.4326670376897629No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15530.3001035772810191No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15090.2916009646600501No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14690.2838713168228056No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13830.2672525739727298No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13830.2672525739727298No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA13210.25527161982500074No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13070.2525662430819652No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12500.24155149491389172No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA10990.2123720743282936No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10420.20135732616022015No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10410.20116408496428903No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10070.19459388430263116No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9330.18029403580372877No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9250.17874810623627987No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8070.1559456451164085No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7960.15381999196116625No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7360.14222552020529944No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6670.12889187768605262No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA6650.1285053952941904No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6490.1254135361592926No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5800.11207989364004575No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5680.1097609992888724No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5630.10879479330921683No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5610.1084083109173546No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5550.10724886374176792No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5500.10628265776211236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)