FastQCFastQC Report
Sun 21 May 2023
EGAF00007940995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518955
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22920.4416567910512472No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17480.33683074640383076No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17000.3275813895231764No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG13250.255320788893064No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12770.24607143201240952No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12640.24356639785723233No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12060.23239009162644161No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11630.22410420942085538No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11540.2223699550057327No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC11140.21466215760518734No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10930.21061556396990105No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10760.20733975007466932No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10750.20714705513965567No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9950.191731460338565No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9450.18209671358788335No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8950.17246196683720166No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8800.16957154281199718No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC8750.16860806813692902No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8560.16494686437166997No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8130.15666098216608376No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8100.15608289736104286No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7990.1539632530758929No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7910.15242169359578384No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7730.14895318476553843No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7610.14664084554537485No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7510.1447138961952385No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7290.14047460762493857No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7180.1383549633397886No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6830.13161064061431146No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6730.12968369126417512No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6600.1271786571089979No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6510.1254444026938752No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6100.11754391035831624No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6100.11754391035831624No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA6090.1173512154233026No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6040.11638774074823444No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5470.10540412945245735No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5200.10020136620708925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)