FastQCFastQC Report
Wed 31 May 2023
EGAF00007940999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488703
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44470.9099596278312185No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24850.5084887958535144No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15790.3231001242063175No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12790.2617131468396961No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12100.24759414204537314No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11820.2418646908244885No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10820.2214023650356147No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10040.2054417509202931No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC10010.2048278811466269No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9930.203190895083517No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9450.19336897870485756No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8940.1829331925525319No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8790.17986384368420083No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8620.17638524830009228No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC8320.17024655056343013No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6970.14262241074845047No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6950.142213164232673No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6950.142213164232673No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6870.1405761781695631No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6080.1244109407963528No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6070.12420631753846405No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6070.12420631753846405No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC6000.1227739547332429No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5970.12216008495957667No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG5730.11724912677024697No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5710.1168398802544695No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5680.11622601048080328No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5630.11520289419135958No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5520.11295203835458346No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5040.10313012197592401No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)