FastQCFastQC Report
Wed 31 May 2023
EGAF00007941001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469503
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42650.9084074010176718No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10960.2334383379871907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9460.2014896603429584No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5520.11757113373077488No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5030.10713456570032567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)