FastQCFastQC Report
Sun 21 May 2023
EGAF00007941005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456233
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53311.1684818941198905No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41030.8993211801864399No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37300.8175647092603998No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29060.6369552399760648No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21910.4802370718470606No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG21290.46664752440090923No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20650.4526196044564948No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20080.4401259882560008No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16640.36472591855477354No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15460.3388619411572596No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14080.3086142387771161No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13390.2934903875870443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11760.257763028978614No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT10170.22291241536670953No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9710.21282984790666173No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9480.20778856417663782No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9300.20384321169227126No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8970.1966100654709326No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8210.17995191053694057No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7870.17249957806647043No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6910.15145769814984889No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6880.15080013940245446No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6690.14663560066895642No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6310.1383065232019604No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6140.13458035696672532No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6070.13304605322280502No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6050.13260768072454207No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5800.1271280244962552No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5410.11857976078012769No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5220.11441522204662967No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4930.10805882082181692No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4800.10520939958310775No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4700.10301753709179302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)