FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473526
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5740.12121826467818028No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5690.12016235644927628No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5320.1123486355553866No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5110.10791382099398976No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4780.1009448266832233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)