FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495469
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42930.8664517860855068No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19350.3905390650070943No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12560.2534971915498245No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11580.23371795208176493No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11330.22867222772766813No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9910.20001251339639817No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9240.18648997212741866No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9000.1816460767474857No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8610.17377474675509466No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6340.1279595696198955No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG5460.11019861989347467No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5450.1099967909193108No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5130.10353826374606685No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5020.10131814503026426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)