FastQCFastQC Report
Sun 21 May 2023
EGAF00007941010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521739
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14180.27178340127918366No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13940.26718340012918335No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13800.26450006612501653No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12300.23575005893751474No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12050.2309583910729311No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9370.17959171156459458No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC8730.16732504183126046No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8010.1535250383812596No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7760.14873337051667596No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7310.14010836836042542No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6940.13301669992084167No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG6790.13014169920209148No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6480.12420003105000775No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG6090.1167250291812573No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5820.11155002788750697No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5470.10484169287708989No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5460.10465002616250654No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5320.1019666921583397No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA5320.1019666921583397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)