FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521739
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18090.34672508668127167No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14260.2733167349958504No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13620.2610500652625163No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12900.24725006181251546No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12320.23613339236668143No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.19377504844376212No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG9990.19147504786876196No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9980.19128338115417864No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9340.17901671142084452No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8840.16943337569167727No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8470.1623417072520935No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7710.14777503694375924No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7330.1404917017895921No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6940.13301669992084167No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6500.12458336447917445No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6450.12362503090625773No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6280.12036669675834086No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6060.11615002903750725No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6020.11538336217917387No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5830.11174169460209031No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5720.10963336074167351No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5440.10426669273333984No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5350.10254169230208975No Hit

[OK]Adapter Content

Adapter graph