FastQCFastQC Report
Wed 31 May 2023
EGAF00007941013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531172
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48220.9078038752042652No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26280.49475499461568No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26140.49211931351803184No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13140.24737749730784No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13060.24587139382346962No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12860.24210613511254359No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12780.24060003162817317No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12260.23081035897976548No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11370.2140549577161447No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11340.21349016890950578No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11210.21104275074740386No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10970.20652444029429262No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10210.19221645719277372No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10160.1912751425150422No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9720.18299157335100494No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9630.18129720693108822No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9540.17960284051117154No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8830.16623617208738414No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7900.14872771908157809No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7690.14477419743510578No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7610.14326809395073536No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7340.13818499469098522No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7250.1364906282710685No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7210.1357375765288833No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7160.1347962618511518No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6430.12105306755627179No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6410.12067654168517919No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6340.11935870113635508No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5870.11051034316567891No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5780.1088159767457622No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5410.10185024813054906No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5390.10147372225945644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)