FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476442
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28900.6065796046528225No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26750.5614534402928373No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20650.4334210669924146No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19430.4078145923323301No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16900.35471264078313836No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14990.314623815700547No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14800.31063592210594365No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14400.30224035664362087No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13990.29363490204473996No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13820.2900667867232528No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13670.2869184496748817No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13350.2802019973050235No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12510.2625713098341456No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11510.2415823961783386No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC11170.23444616553536424No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG11100.23297694157945772No Hit
CTGTGCGCGGTCGCCGCTACCCGGAGACACCAGACCGCCCGGCA10280.21576603238169598No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10040.21072869310430228No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9890.20758035605593128No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9830.20632102123658283No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9560.20065401454951495No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT9260.19435734045277284No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9060.19015955772161144No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8730.18323321621519512No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7360.15447840450673953No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7060.14818173040999744No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7050.14797184127343938No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6640.1393663866745585No Hit
GGCAACGTTGGTACAAACACGAGCGCCGTTACCGCTAGAGAAGC5690.11942691870154186No Hit
ACCGCGAGACTGTGCGTTGTTCACCGCGTGGTGCGCGTCGGATT5670.11900714042842571No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5660.11879725129186763No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5630.11816758388219344No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5460.11459946856070624No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5330.11187090978545132No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5150.10809290532740608No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG4960.10410501173280272No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4950.10389512259624467No Hit
AGCAATACCTTCGTCGATCGCGCCTGCGCTCAGATCGGTTGCCA4780.10032700727475748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)