FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490821
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12890.2626211999894055No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12680.25834265445040044No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12480.25426784917515755No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12080.2461182386246717No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10740.21881704328054422No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8220.16747449681248355No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8210.16727075654872142No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8040.16380717206476494No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7950.16197350969090565No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7170.1460817691174583No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7140.14547054832617184No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6660.1356910156655889No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5830.11878057377333082No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5830.11878057377333082No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5810.11837309324580653No Hit
ACGCTGCTGGATAGCGTCTTTGATGATCTGCGGCAGAATTTTAC5250.10696363847512637No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5220.10635241768383993No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5200.10594493715631564No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5100.1039075345186942No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5030.10248135267235917No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4920.10024020977097557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)