FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498237
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10050.2017112338104155No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9760.19589071064573688No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6800.13648123282694782No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6490.13025929427160168No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6090.1222309864582518No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5860.11761470946557562No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5190.10416729387821458No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5110.1025616323155446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)