FastQCFastQC Report
Sun 21 May 2023
EGAF00007941021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502466
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33450.6657166853080606No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31330.6235247758057261No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26250.5224234077529624No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24640.490381438744114No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15080.30011980910151137No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14860.2957414033984389No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14390.28638753666914774No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14390.28638753666914774No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12930.2573308442760306No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12660.25195734636771444No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10750.21394482412740362No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10690.2127507134811112No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10600.21095954751167242No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9750.19404298002252887No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9200.18309696576484777No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9170.18249991044170152No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8490.1689666564503867No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6930.13791977964678206No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6920.13772076120573332No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6680.13294431862056338No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6660.1325462817384659No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6430.1279688575943447No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6160.1225953596860285No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6050.12040615683449228No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6010.11961008307029729No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6000.11941106462924854No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5960.11861499086505355No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5880.11702284333666357No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5790.11523167736722485No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5270.10488271843268997No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5030.10010627584752002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)