FastQCFastQC Report
Sun 21 May 2023
EGAF00007941022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497252
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG23380.47018413198941383No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG19770.39758512786273353No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15360.308897701768922No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG15320.3080932806705654No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11990.24112522423238117No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10280.2067362222776379No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9540.1918544319580414No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8840.17777706273680147No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6450.12971290210999656No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5800.11664105926170233No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5470.11000458520026063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)