FastQCFastQC Report
Wed 31 May 2023
EGAF00007941023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497252
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC26270.5283035563456758No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG25970.5222703981080016No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG24250.48768029087866915No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC17170.3452977564695567No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15590.3135231230844723No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11930.23991859258484632No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10360.20834506447435105No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8990.1807936418556386No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6880.13836042891732964No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6510.1309195337575314No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5580.11221674322074118No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5470.11000458520026063No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG5140.10336811113881895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)