FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504714
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19070.37783774573322715No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13570.2688651394651228No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13390.26529876325998486No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12140.2405322618354157No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12010.2379565456872605No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11410.2260686250034673No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10710.21219938420570858No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9420.1866403547355532No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9160.1814889224392428No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9130.18089452640505316No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9000.17831881025689797No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7320.145032632342277No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6780.13433350372686312No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6680.1323521836128976No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6600.13076712752172517No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5660.11214271845044917No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC5660.11214271845044917No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5290.1048118340287767No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5230.10362304196039737No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5210.10322677793760428No Hit

[OK]Adapter Content

Adapter graph